2.3.5 (2018-12-30)
Improvements: Using the temporary file to allow to run CIRCexplorer2 in the same directory simultaneously (issue #26). Thanks @egaffo. Happy New Year!
2.3.4 (2018-10-26)
Bugfixes:
- bug in fetch_ucsc.py when using python3, thanks @lardenoije
2.3.3 (2018-02-27)
Bugfixes:
- bug in fetch_ucsc.py when using python3 (issue #17)
2.3.2 (2017-10-05)
Improvements:
- more safe way to trim the last comma of ref file, thanks @Tong-Chen (issue #14)
2.3.1 (2017-10-03)
Bugfixes:
- bug in fast_circ.py
2.3.0 (2017-09-01)
Improvements:
- reorganize inputs and outputs
- add alternative back-splicing analysis
- support Python 3
Bugfixes:
- bug in align step
2.2.7 (2017-07-20)
Bugfixes:
- fix a display error in assemble step
- fix a bug with "--low-confidence" option in annotate step
2.2.6 (2016-09-25)
Bugfixes:
- bug in building bowtie1/2 index using multiple threads
- bug in parsing Drosophila circRNAs
2.2.5 (2016-09-17)
Improvements:
- let fetch_ucsc.py support mm9
2.2.4 (2016-09-02)
Bugfixes:
- fix a bug in align module
2.2.3 (2016-08-19)
Bugfixes:
- fix a bug in align module
2.2.2 (2016-08-16)
Improvements:
- update logic of annotate step
- update build index module
2.2.1 (2016-08-08)
Improvements:
- chang option '-p' to '--pe' in parse module
- add 'fast_circ.py'
Bugfixes:
- bug in align module because of parse module
2.2.0 (2016-08-04)
Improvements:
- add paired-end data parsing function
2.1.2 (2016-07-22)
Improvements:
- add '--low-confidence' option
2.1.1 (2016-07-20)
Bugfixes:
- bug that ignores case-sensitivity in fusion fix step
Improvements:
- improve fusion junction identification efficiency for BWA
2.1.0 (2016-07-04)
Improvements:
- support for BWA
Bugfixes:
- change module name from 'circ' to 'circ2' in case of conflict with CIRCexplorer (issue #1)
2.0.1 (2016-06-21)
Improvements:
- test on PyPI and Bioconda
- lots of code improvements
2.0.0 (2016-04-05)
Features:
- pre-release for CIRCexplorer2